Technical Note 210

Automated Pollen Viability Counts


Pollen species vary in their shapes and sizes, the vectors that transport them and their viability once mature. Depending on environmental conditions, some species may remain viable only for hours while others for several months. Traditional viability assay methods, such as germination assays and manual pollen counts with a hemocytometer, are time consuming and labor intensive operations. This technical note describes how rapid and accurate viable pollen counts can be determined using the DeNovix CellDrop FL Automated Cell Counter in conjunction with fluorescein diacetate (FDA) fluorescent stain.

Materials and Methods

Staining protocols to quantify the number of viable pollen grains in a sample were adapted from a method published by V. Pinillos and J. Cuevas, which used fluorescein diacetate (FDA)(1). This method serves as an indicator for membrane integrity, since only viable pollen grains fluoresce. Briefly, pollen was harvested from freshly cut anthers from the Datura stramonium flower. Stock FDA dissolved in DMSO was diluted to a concentration of 6 X 10-5  M in 0.5 M sucrose buffer. A clean pipette tip was used to transfer the pollen grains from the anther into 20 µL of FDA working solution and allowed to incubate for 5 minutes.

10 µL of sample was loaded onto the sample surfaces, and proper exposure was set to minimize saturation of the fluorescing pollen. Automated counting of pollen grains was performed according to the parameters in Table 1.

CellDrop EasyApps® are designed to count a variety of cell types with minimal customization. If necessary, the user has the ability to optimize count settings. For pollen species that are more elliptical or elongated, Irregular Cell Mode may be selected to optimize counts.

Pollen Protocol Settings

Table 1: Count Settings for D. Stramonium pollen grains

Count ApplicationAO
Chamber Height100 µm
Dilution Factor1
Diameter (min)50 µm
Diameter (max)75 µm
Green Fluorescence Threshold1

Results and Summary

Viable pollen grains fluoresce green when FDA enters healthy pollen and is hydrolyzed by intracellular esterases (Figure 1). Non-viable pollen grains and debris do not fluoresce and are not counted. Results for total viable pollen counts are displayed as Live Cell Counts and viable pollen concentrations are reported as Live Cells/mL.

The DeNovix CellDrop FL Automated Cell Counter, used in conjunction with FDA, increases efficiency and accuracy when determining viable pollen counts. Samples between 7 x 102 and 2.5 x 107 cells/mL and between 4 and 400 µm can be measured without dilution. The CellDrop EasyApps software uses powerful and flexible counting algorithms that allow users to customize count settings, enabling accurate counting and viability determination of a wide variety of pollen types and sizes with rapid results.

Figure 1: Result Image of Pollen from D. Stramonium Stained with FDA. Live pollen grains fluoresce green, non-viable pollen grains and debris do not fluoresce and are not counted

1. V Pinillos & J Cuevas (2008) Standardization of fluorochromatic reaction test to assess pollen viability, Biotechnic & Histochemistry, 83:1, 15-21.

Revised 19 Oct 2020